PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01974.1.p
Common NameLOC105970409, MIMGU_mgv1a006727mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TCP
Protein Properties Length: 434aa    MW: 47640.2 Da    PI: 6.5602
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01974.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.61.8e-37451833132
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec.eaessss 80 
                       g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++                   + +  +++   
  Migut.H01974.1.p  45 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLpawhptatcpppppL----NPSfRPDDAAA 133
                       89*************************************************************777776655433320....22233333333 PP

               TCP  81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                       +++n+++++++++++  +++s k+a     + +e+ ++++++ r r++  ++ 
  Migut.H01974.1.p 134 QHKNEHEEEEEEEENhRQSDSGKRA---MVMLQEEEEEEQEQDRRRQQALHHH 183
                       3332222222222221222222222...3333333333333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3345184IPR005333Transcription factor, TCP
PROSITE profilePS5136933.16546104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGGGDGSSSH HHQPTPSRLG LRSAAGAAVG EIVEVQGGHI VRSIGRKDRH SKVCTAKGPR  60
DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKSA IDELAQLPAW HPTATCPPPP  120
PLNPSFRPDD AAAQHKNEHE EEEEEEENHR QSDSGKRAMV MLQEEEEEEQ EQDRRRQQAL  180
HHHNNSNPPQ ISSFLPPSMD SDVIADTIKS FFPMGASGES NSSGMQFHQP DNNQDLRLSL  240
QSFQDPIMLH HHHHRHHQTL THHHHNNEQS PPRGGQVLLS GIPLAFDGTP PWPDHHQFQR  300
LPPWNPAADA ATAGGGVGGG NMFNSPPPVP QQPLLQQLLG HNQFFQQQQQ RGPLQSSNTP  360
SIRAWIDPST MSDHNSGFIP IYPSSLSGIG FSGGFPGGFP GGGFHIPARI QGDEEEHDGY  420
SDKPSSASSD SRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688631e-73AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818311e-73FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850679.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR53e-84TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A022QIJ20.0A0A022QIJ2_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000322681e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-37TCP family protein